SALON - Sequence ALingment Ontology for pairwise and multiple sequence alignments

Classes ↑

Alignment^c # Classes

URI	`https://w3id.org/salon#Alignment`
Description	Set of biological sequences, used to identify regions of similarity that may indicate functional, structural and/or evolutionary relationships between them.
Restrictions	Has Alignment Score^op some Alignment Score^c Has Subalignment^op some Sub Alignment^c Has Column^op some Alignment Column^c
Sub-classes	Correct Alignment^c Incorrect Alignment^c
In domain of	Has Column^op Has Subalignment^op Has Alignment Score^op
In range of	Is Column Of^op Is Subalignment Of^op

Alignment Column^c # Classes

URI	`https://w3id.org/salon#AlignmentColumn`
Description	A representation of a column in the alignment. Note that a column with all gaps is not allowed.
Restrictions	Has Column Score^op some Column Score^c
Sub-classes	Unconfidently Aligned Column^c Confidently Aligned Column^c
In domain of	Is Column Of^op Column weight^dp Sequence index^dp Column^dp Has Column Score^op Consensus character^dp
In range of	Has Column^op

Alignment Score^c # Classes

URI	`https://w3id.org/salon#AlignmentScore`
Description	A score given to the alignment.
Restrictions	Has Column Score Function^op exactly 1 Alignment Score Function^c
In domain of	Has Alignment Score Function^op
In range of	Has Alignment Score^op

Alignment Score Function^c # Classes

URI	`https://w3id.org/salon#AlignmentScoreFunction`
Description	The method used to calculate the scoring function.
Sub-classes	Maximization Alignment Score Function^c Minimization Alignment Score Function^c
In range of	Has Alignment Score Function^op

Alignment Sequence^c # Classes

URI	`https://w3id.org/salon#AlignmentSequence`
Description	An ordered succession of residues and gap characters in a sequence. For proteins, this is known as the primary structure.
Restrictions	Has Feature^op some Feature^c
Sub-classes	Protein Sequence^c DNA Sequence^c
In domain of	Sequence Identifier^dp Sequence length^dp Has Feature^op Sequence^dp Sequence organism^dp Is Sequence Of^op
In range of	Has Sequence^op Is Feature Of^op

Column Score^c # Classes

URI	`https://w3id.org/salon#ColumnScore`
Description	A score given to a single column.
Restrictions	Has Column Score Function^op exactly 1 Column Score Function^c
In domain of	Has Column Score Function^op
In range of	Has Column Score^op

Column Score Function^c # Classes

URI	`https://w3id.org/salon#ColumnScoreFunction`
Description	The method used to calculate the scoring function for a given column.
Sub-classes	Maximization Column Score Function^c Minimization Column Score Function^c Reliability Measure^c
In range of	Has Column Score Function^op

Confidently Aligned Column^c # Classes

URI	`https://w3id.org/salon#ConfidentlyAlignedColumn`
Description	Column in the alignment with high confidence score.
Super-classes	Alignment Column^c

Construction Method^c # Classes

URI	`https://w3id.org/salon#ConstructionMethod`
Description	The method or algorithm used to construct the sequence alignment.
Sub-classes	Deterministic Approach^c Stochastic Approach^c
In range of	Has Construction Method^op
Members	DynamicProgramming

Correct Alignment^c # Classes

URI	`https://w3id.org/salon#CorrectAlignment`
Description	Valid alignment in terms of scoring.
Super-classes	Alignment^c

DNA Sequence^c # Classes

URI	`https://w3id.org/salon#DNAAlignmentSequence`
Description	Nucleotides Sequence.
Super-classes	Alignment Sequence^c

Deterministic Approach^c # Classes

URI	`https://w3id.org/salon#DeterministicApproach`
Description	Approach that produces the same alignment every time.
Super-classes	Construction Method^c
Sub-classes	Iterative method^c Progressive method^c Hidden Markov model^c

Evolutionary algorithm^c # Classes

URI	`https://w3id.org/salon#EvolutionaryAlgorithm`
Description	Population-based optimization algorithm.
Super-classes	Stochastic Approach^c
Sub-classes	Genetic Algorithm^c

Feature^c # Classes

URI	`https://w3id.org/salon#Feature`
Description	Structural or functional feature associated with a sequence, e.g., a region of interest, a secondary structure element, etc.
In domain of	Feature note^dp Feature type^dp Is Feature Of^op Feature start^dp Feature score^dp Feature stop^dp
In range of	Has Feature^op

Genetic Algorithm^c # Classes

URI	`https://w3id.org/salon#Genetic_Algorithm`
Description	Evolutionary computation technique inspired by biological evolution.
Super-classes	Evolutionary algorithm^c

Hidden Markov model^c # Classes

URI	`https://w3id.org/salon#HiddenMarkovModel`
Description	Probabilistic model that encapsulate the evolutionary changes of an alignment.
Super-classes	Deterministic Approach^c
Members	MUMMALS

Incorrect Alignment^c # Classes

URI	`https://w3id.org/salon#IncorrectAlignment`
Description	Invalid alignment in terms of scoring.
Super-classes	Alignment^c

Iterative method^c # Classes

URI	`https://w3id.org/salon#IterativeMethod`
Description	Heuristic that realigns the sequences during multiple iterations of the alignment process.
Super-classes	Deterministic Approach^c
Members	MUSLCLE PRIME MAFFT

Maximization Alignment Score Function^c # Classes

URI	`https://w3id.org/salon#MaximizationAlignmentScoreFunction`
Description	The cost function to maximize (direction of optimization).
Super-classes	Alignment Score Function^c
Members	AlignmentScoreTC AlignmentScoreGUIDANCE

Maximization Column Score Function^c # Classes

URI	`https://w3id.org/salon#MaximizationColumnScoreFunction`
Description	The cost function to maximize (direction of optimization).
Super-classes	Column Score Function^c
Members	ColumnScoreNongapsPercentage ColumnScoreSOP ColumnScoreTC ColumnScoreGUIDANCE

Minimization Alignment Score Function^c # Classes

URI	`https://w3id.org/salon#MinimizationAlignmentScoreFunction`
Description	The cost function to minimize (direction of optimization).
Super-classes	Alignment Score Function^c

Minimization Column Score Function^c # Classes

URI	`https://w3id.org/salon#MinimizationColumnScoreFunction`
Description	The cost function to minimize (direction of optimization).
Super-classes	Column Score Function^c
Members	ColumnScoreShannonEntropy

Progressive method^c # Classes

URI	`https://w3id.org/salon#ProgressiveMethod`
Description	The alignment starts with one sequence and progressively aligns the others.
Super-classes	Deterministic Approach^c
Members	ClustalW SATCHMO KAlign T-Coffee

Protein^c # Classes

URI	`https://w3id.org/salon#Protein`
Description	The protein associated to an amino acid sequence.
In domain of	Protein gene^dp Protein description^dp Protein name^dp
In range of	Has Association With^op

Protein Sequence^c # Classes

URI	`https://w3id.org/salon#ProteinAlignmentSequence`
Description	Amino Acids Sequence.
Super-classes	Alignment Sequence^c
Restrictions	Has Association With^op some Protein^c
In domain of	Has Association With^op

Reliability Measure^c # Classes

URI	`https://w3id.org/salon#ReliabilityMeasure`
Description	Reliability measure to estimate alignment accuracy.
Super-classes	Column Score Function^c
In domain of	Score Cutoff^dp
Members	ColumnScoreGUIDANCE

Stochastic Approach^c # Classes

URI	`https://w3id.org/salon#StochasticApproach`
Description	Approach that uses randomness to find an alignment.
Super-classes	Construction Method^c
Sub-classes	Evolutionary algorithm^c

Sub Alignment^c # Classes

URI	`https://w3id.org/salon#SubAlignment`
Description	A subset of sequences in the alignment.
Restrictions	Has Sequence^op min 2 Alignment Sequence^c
In domain of	SubAlignment name^dp Has Sequence^op Gap character^dp Has Construction Method^op Is Subalignment Of^op
In range of	Is Sequence Of^op Has Subalignment^op

Unconfidently Aligned Column^c # Classes

URI	`https://w3id.org/salon#UnconfidentlyAlignedColumn`
Description	Column in the alignment with low confidence score.
Super-classes	Alignment Column^c

Has Association With^op # OPs

URI	`https://w3id.org/salon#associatedTo`
Domain(s)	Protein Sequence^c
Range(s)	Protein^c

Has Construction Method^op # OPs

URI	`https://w3id.org/salon#constructionMethod`
Domain(s)	Sub Alignment^c
Range(s)	ConstructionMethod^c

Has Alignment Score^op # OPs

URI	`https://w3id.org/salon#hasAlignmentScore`
Domain(s)	Alignment^c
Range(s)	AlignmentScore^c

Has Alignment Score Function^op # OPs

URI	`https://w3id.org/salon#hasAlignmentScoreFunction`
Domain(s)	Alignment Score^c
Range(s)	AlignmentScoreFunction^c

Has Column^op # OPs

URI	`https://w3id.org/salon#hasColumn`
Inverse properties	Is Column Of^op
Domain(s)	Alignment^c
Range(s)	AlignmentColumn^c

Has Column Score^op # OPs

URI	`https://w3id.org/salon#hasColumnScore`
Domain(s)	Alignment Column^c
Range(s)	ColumnScore^c

Has Column Score Function^op # OPs

URI	`https://w3id.org/salon#hasColumnScoreFunction`
Domain(s)	Column Score^c
Range(s)	ColumnScoreFunction^c

Has Feature^op # OPs

URI	`https://w3id.org/salon#hasFeature`
Inverse properties	Is Feature Of^op
Domain(s)	Alignment Sequence^c
Range(s)	Feature^c

Has Sequence^op # OPs

URI	`https://w3id.org/salon#hasSequence`
Inverse properties	Is Sequence Of^op
Domain(s)	Sub Alignment^c
Range(s)	AlignmentSequence^c

Has Subalignment^op # OPs

URI	`https://w3id.org/salon#hasSubalignment`
Inverse properties	Is Subalignment Of^op
Domain(s)	Alignment^c
Range(s)	SubAlignment^c

Is Column Of^op # OPs

URI	`https://w3id.org/salon#isColumnOf`
Domain(s)	Alignment Column^c
Range(s)	Alignment^c

Is Feature Of^op # OPs

URI	`https://w3id.org/salon#isFeatureOf`
Domain(s)	Feature^c
Range(s)	AlignmentSequence^c

Is Sequence Of^op # OPs

URI	`https://w3id.org/salon#isSequenceOf`
Domain(s)	Alignment Sequence^c
Range(s)	SubAlignment^c

Is Subalignment Of^op # OPs

URI	`https://w3id.org/salon#isSubalignmentOf`
Domain(s)	Sub Alignment^c
Range(s)	Alignment^c

Datatype Properties ↑

Protein recommended name^dp # DPs

URI	`http://purl.uniprot.org/core/Recommended_Name`
Equivalent properties	Protein name^dp

Mnemonic^dp # DPs

URI	`http://purl.uniprot.org/core/mnemonic`
Equivalent properties	Accession number^dp

Feature note^dp # DPs

URI	`https://w3id.org/salon#FNote`
Domain(s)	Feature^c
Range(s)	xsd:string^c

Feature score^dp # DPs

URI	`https://w3id.org/salon#FScore`
Domain(s)	Feature^c
Range(s)	http://www.w3.org/2001/XMLSchema#float http://www.w3.org/2001/XMLSchema#integer

Feature start^dp # DPs

URI	`https://w3id.org/salon#FStart`
Description	The start position of the feature.
Domain(s)	Feature^c
Range(s)	xsd:int^c

Feature stop^dp # DPs

URI	`https://w3id.org/salon#FStop`
Description	The end position of the feature.
Domain(s)	Feature^c
Range(s)	xsd:int^c

Feature type^dp # DPs

URI	`https://w3id.org/salon#FType`
Domain(s)	Feature^c
Range(s)	xsd:string^c

Accession number^dp # DPs

URI	`https://w3id.org/salon#accessionNumber`
Description	A unique identifier in the databases. Accession numbers should remain static between database updates.
Domain(s)	(Alignment Sequence^c or Protein^c)
Range(s)	xsd:string^c

Sequence index^dp # DPs

URI	`https://w3id.org/salon#atSequenceIndex`
Description	The position of the column in the alignment.
Domain(s)	Alignment Column^c
Range(s)	xsd:integer^c

Column^dp # DPs

URI	`https://w3id.org/salon#column`
Description	Alignment column data (one character for each sequence).
Domain(s)	Alignment Column^c
Range(s)	xsd:string^c

Column weight^dp # DPs

URI	`https://w3id.org/salon#columnWeight`
Description	A weight associated with a given column.
Domain(s)	Alignment Column^c
Range(s)	xsd:integer^c

Consensus character^dp # DPs

URI	`https://w3id.org/salon#consensusCharacter`
Description	A consensus character that summarises the residue information contained in an alignment column.
Domain(s)	Alignment Column^c
Range(s)	xsd:string^c

Description^dp # DPs

URI	`https://w3id.org/salon#description`
Description	A general description of the entity.
Domain(s)	(Alignment Sequence^c or Protein^c)
Range(s)	xsd:string^c

Gap character^dp # DPs

URI	`https://w3id.org/salon#gapCharacter`
Description	The character used to represent an insertion/deletion.
Super-properties	owl:topDataProperty
Domain(s)	Sub Alignment^c
Range(s)	http://www.w3.org/2001/XMLSchema#short http://www.w3.org/2001/XMLSchema#string

Protein gene^dp # DPs

URI	`https://w3id.org/salon#geneName`
Description	The gene by which the protein is encoded.
Domain(s)	Protein^c
Range(s)	xsd:string^c

Sequence Identifier^dp # DPs

URI	`https://w3id.org/salon#identifier`
Description	The name or UID given to the sequence.
Domain(s)	Alignment Sequence^c
Range(s)	xsd:string^c

Keyword^dp # DPs

URI	`https://w3id.org/salon#keyword`
Description	A keyword provides information that can be used to generate indexes of the entries based on functional, structural, or other categories.
Domain(s)	(Alignment Sequence^c or Protein^c)
Range(s)	xsd:string^c

Sequence length^dp # DPs

URI	`https://w3id.org/salon#length`
Description	The length of the sequence.
Domain(s)	Alignment Sequence^c
Range(s)	xsd:int^c

Sequence organism^dp # DPs

URI	`https://w3id.org/salon#organism`
Description	The unique identifier of the organism that was the source of the sequence by the NCBI.
Domain(s)	Alignment Sequence^c
Range(s)	xsd:string^c

Protein description^dp # DPs

URI	`https://w3id.org/salon#proteinDescription`
Domain(s)	Protein^c
Range(s)	xsd:string^c

Protein name^dp # DPs

URI	`https://w3id.org/salon#proteinName`
Description	Recommended name of the protein associated to the amino acid sequence.
Domain(s)	Protein^c
Range(s)	xsd:string^c

Score^dp # DPs

URI	`https://w3id.org/salon#score`
Description	A score or metric computed for the alignment.
Domain(s)	(Alignment Score^c or Column Score^c)
Range(s)	http://www.w3.org/2001/XMLSchema#float http://www.w3.org/2001/XMLSchema#integer

Score Cutoff^dp # DPs

URI	`https://w3id.org/salon#scoreCutoff`
Description	Cutoff value is used as a classification criterion to separate columns into reliable and unreliable based on the score value.
Domain(s)	Reliability Measure^c

Score Max^dp # DPs

URI	`https://w3id.org/salon#scoreMax`
Domain(s)	(Alignment Score Function^c or Column Score Function^c)
Range(s)	http://www.w3.org/2001/XMLSchema#float http://www.w3.org/2001/XMLSchema#integer

Score Min^dp # DPs

URI	`https://w3id.org/salon#scoreMin`
Domain(s)	(Alignment Score Function^c or Column Score Function^c)
Range(s)	http://www.w3.org/2001/XMLSchema#float http://www.w3.org/2001/XMLSchema#integer

Sequence^dp # DPs

URI	`https://w3id.org/salon#sequence`
Description	The sequence itself, made up of residues and gap characters.
Domain(s)	Alignment Sequence^c
Range(s)	xsd:string^c

SubAlignment name^dp # DPs

URI	`https://w3id.org/salon#subAlignmentName`
Domain(s)	Sub Alignment^c
Range(s)	xsd:string^c

Annotation Properties ↑

bibliographicCitation^ap # APs

URI	`http://purl.org/dc/terms/bibliographicCitation`

created^ap # APs

URI	`http://purl.org/dc/terms/created`

creator^ap # APs

URI	`http://purl.org/dc/terms/creator`

description^ap # APs

URI	`http://purl.org/dc/terms/description`

identifier^ap # APs

URI	`http://purl.org/dc/terms/identifier`

issued^ap # APs

URI	`http://purl.org/dc/terms/issued`

license^ap # APs

URI	`http://purl.org/dc/terms/license`

modified^ap # APs

URI	`http://purl.org/dc/terms/modified`

publisher^ap # APs

URI	`http://purl.org/dc/terms/publisher`

rights^ap # APs

URI	`http://purl.org/dc/terms/rights`

source^ap # APs

URI	`http://purl.org/dc/terms/source`

title^ap # APs

URI	`http://purl.org/dc/terms/title`

preferredNamespacePrefix^ap # APs

URI	`http://purl.org/vocab/vann/preferredNamespacePrefix`

preferredNamespaceUri^ap # APs

URI	`http://purl.org/vocab/vann/preferredNamespaceUri`

isRuleEnabled^ap # APs

URI	`http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled`

versionInfo^ap # APs

URI	`http://www.w3.org/2002/07/owl#versionInfo`

affiliation^ap # APs

URI	`https://schema.org/affiliation`

codeRepository^ap # APs

URI	`https://schema.org/codeRepository`

email^ap # APs

URI	`https://schema.org/email`

identifier^ap # APs

URI	`https://schema.org/identifier`

name^ap # APs

URI	`https://schema.org/name`

url^ap # APs

URI	`https://schema.org/url`

Named Individuals ↑

AlignmentScoreGUIDANCE
AlignmentScoreTC
ClustalW
ColumnScoreGUIDANCE
ColumnScoreNongapsPercentage
ColumnScoreSOP
ColumnScoreShannonEntropy
ColumnScoreTC
Dynamic programming
KAlign
MAFFT
MUMMALS
MUSLCLE
PRIME
SATCHMO
T-Coffee

AlignmentScoreGUIDANCEⁿⁱ

Class(es)

MaximizationAlignmentScoreFunction

URI	`https://w3id.org/salon#AlignmentScoreGUIDANCE`

AlignmentScoreTCⁿⁱ

Class(es)

MaximizationAlignmentScoreFunction

URI	`https://w3id.org/salon#AlignmentScoreTC`

ClustalWⁿⁱ

Class(es)

ProgressiveMethod

URI	`https://w3id.org/salon#ClustalW`

ColumnScoreGUIDANCEⁿⁱ

Class(es)

ReliabilityMeasure
MaximizationColumnScoreFunction

URI	`https://w3id.org/salon#ColumnScoreGUIDANCE`

ColumnScoreNongapsPercentageⁿⁱ

Class(es)

MaximizationColumnScoreFunction

URI	`https://w3id.org/salon#ColumnScoreNongapsPercentage`

ColumnScoreSOPⁿⁱ

Class(es)

MaximizationColumnScoreFunction

URI	`https://w3id.org/salon#ColumnScoreSOP`

ColumnScoreShannonEntropyⁿⁱ

Class(es)

MinimizationColumnScoreFunction

URI https://w3id.org/salon#ColumnScoreShannonEntropy

Description H ranges from 0 (only one residue in present at that position) to 4.322 (all 20 residues are equally represented in that position). Typically, positions with H >2.0 are considerered variable, whereas those with H < 2 are consider conserved. Highly conserved positions are those with H <1.0 (Litwin and Jores, 1992). A minimum number of sequences is however required (~100) for H to describe the diversity of a protein family.

ColumnScoreTCⁿⁱ

Class(es)

MaximizationColumnScoreFunction

URI	`https://w3id.org/salon#ColumnScoreTC`

Dynamic programmingⁿⁱ

Class(es)

ConstructionMethod

URI	`https://w3id.org/salon#DynamicProgramming`

KAlignⁿⁱ

Class(es)

ProgressiveMethod

URI	`https://w3id.org/salon#KAlign`

MAFFTⁿⁱ

Class(es)

IterativeMethod

URI	`https://w3id.org/salon#MAFFT`

MUMMALSⁿⁱ

Class(es)

HiddenMarkovModel

URI	`https://w3id.org/salon#MUMMALS`

MUSLCLEⁿⁱ

Class(es)

IterativeMethod

URI	`https://w3id.org/salon#MUSLCLE`

PRIMEⁿⁱ

Class(es)

IterativeMethod

URI	`https://w3id.org/salon#PRIME`

SATCHMOⁿⁱ

Class(es)

ProgressiveMethod

URI	`https://w3id.org/salon#SATCHMO`

T-Coffeeⁿⁱ

Class(es)

ProgressiveMethod

URI	`https://w3id.org/salon#T-Coffee`

Namespaces ↑

default (salon): https://w3id.org/salon#
brick: https://brickschema.org/schema/Brick#
csvw: http://www.w3.org/ns/csvw#
dc: http://purl.org/dc/elements/1.1/
dcam: http://purl.org/dc/dcam/
dcat: http://www.w3.org/ns/dcat#
dcmitype: http://purl.org/dc/dcmitype/
dcterms: http://purl.org/dc/terms/
doap: http://usefulinc.com/ns/doap#
foaf: http://xmlns.com/foaf/0.1/
obda: https://w3id.org/obda/vocabulary#
odrl: http://www.w3.org/ns/odrl/2/
org: http://www.w3.org/ns/org#
owl: http://www.w3.org/2002/07/owl#
prof: http://www.w3.org/ns/dx/prof/
prov: http://www.w3.org/ns/prov#
qb: http://purl.org/linked-data/cube#
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs: http://www.w3.org/2000/01/rdf-schema#
sdo: https://schema.org/
sh: http://www.w3.org/ns/shacl#
skos: http://www.w3.org/2004/02/skos/core#
sosa: http://www.w3.org/ns/sosa/
ssn: http://www.w3.org/ns/ssn/
swrl: http://www.w3.org/2003/11/swrl#
swrla: http://swrl.stanford.edu/ontologies/3.3/swrla.owl#
swrlb: http://www.w3.org/2003/11/swrlb#
time: http://www.w3.org/2006/time#
uniprot: http://purl.uniprot.org/core/
vann: http://purl.org/vocab/vann/
void: http://rdfs.org/ns/void#
xsd: http://www.w3.org/2001/XMLSchema#

^c	Classes
^op	Object Properties
^fp	Functional Properties
^dp	Data Properties
^ap	Annotation Properties
^p	Properties
ⁿⁱ	Named Individuals

SALON - Sequence ALingment Ontology for pairwise and multiple sequence alignments

Metadata

Description

Table of Contents

Overview

Classes ↑

Alignmentc # Classes

Alignment Columnc # Classes

Alignment Scorec # Classes

Alignment Score Functionc # Classes

Alignment Sequencec # Classes

Column Scorec # Classes

Column Score Functionc # Classes

Confidently Aligned Columnc # Classes

Construction Methodc # Classes

Correct Alignmentc # Classes

DNA Sequencec # Classes

Deterministic Approachc # Classes

Evolutionary algorithmc # Classes

Featurec # Classes

Genetic Algorithmc # Classes

Hidden Markov modelc # Classes

Incorrect Alignmentc # Classes

Iterative methodc # Classes

Maximization Alignment Score Functionc # Classes

Maximization Column Score Functionc # Classes

Minimization Alignment Score Functionc # Classes

Minimization Column Score Functionc # Classes

Progressive methodc # Classes

Proteinc # Classes

Protein Sequencec # Classes

Reliability Measurec # Classes

Stochastic Approachc # Classes

Sub Alignmentc # Classes

Unconfidently Aligned Columnc # Classes

Object Properties ↑

Has Association Withop # OPs

Has Construction Methodop # OPs

Has Alignment Scoreop # OPs

Has Alignment Score Functionop # OPs

Has Columnop # OPs

Has Column Scoreop # OPs

Has Column Score Functionop # OPs

Has Featureop # OPs

Has Sequenceop # OPs

Has Subalignmentop # OPs

Is Column Ofop # OPs

Is Feature Ofop # OPs

Is Sequence Ofop # OPs

Is Subalignment Ofop # OPs

Datatype Properties ↑

Protein recommended namedp # DPs

Mnemonicdp # DPs

Feature notedp # DPs

Feature scoredp # DPs

Feature startdp # DPs

Feature stopdp # DPs

Feature typedp # DPs

Accession numberdp # DPs

Sequence indexdp # DPs

Columndp # DPs

Column weightdp # DPs

Consensus characterdp # DPs

Descriptiondp # DPs

Gap characterdp # DPs

Protein genedp # DPs

Sequence Identifierdp # DPs

Keyworddp # DPs

Sequence lengthdp # DPs

Sequence organismdp # DPs

Protein descriptiondp # DPs

Protein namedp # DPs

Scoredp # DPs

Score Cutoffdp # DPs

Score Maxdp # DPs

Score Mindp # DPs

Sequencedp # DPs

SubAlignment namedp # DPs

Annotation Properties ↑

bibliographicCitationap # APs

Alignment^c # Classes

Alignment Column^c # Classes

Alignment Score^c # Classes

Alignment Score Function^c # Classes

Alignment Sequence^c # Classes

Column Score^c # Classes

Column Score Function^c # Classes

Confidently Aligned Column^c # Classes

Construction Method^c # Classes

Correct Alignment^c # Classes

DNA Sequence^c # Classes

Deterministic Approach^c # Classes

Evolutionary algorithm^c # Classes

Feature^c # Classes

Genetic Algorithm^c # Classes

Hidden Markov model^c # Classes

Incorrect Alignment^c # Classes

Iterative method^c # Classes

Maximization Alignment Score Function^c # Classes

Maximization Column Score Function^c # Classes

Minimization Alignment Score Function^c # Classes

Minimization Column Score Function^c # Classes

Progressive method^c # Classes

Protein^c # Classes

Protein Sequence^c # Classes

Reliability Measure^c # Classes

Stochastic Approach^c # Classes

Sub Alignment^c # Classes

Unconfidently Aligned Column^c # Classes

Has Association With^op # OPs

Has Construction Method^op # OPs

Has Alignment Score^op # OPs

Has Alignment Score Function^op # OPs

Has Column^op # OPs

Has Column Score^op # OPs

Has Column Score Function^op # OPs

Has Feature^op # OPs

Has Sequence^op # OPs

Has Subalignment^op # OPs

Is Column Of^op # OPs

Is Feature Of^op # OPs

Is Sequence Of^op # OPs

Is Subalignment Of^op # OPs

Protein recommended name^dp # DPs

Mnemonic^dp # DPs

Feature note^dp # DPs

Feature score^dp # DPs

Feature start^dp # DPs

Feature stop^dp # DPs

Feature type^dp # DPs

Accession number^dp # DPs

Sequence index^dp # DPs

Column^dp # DPs

Column weight^dp # DPs

Consensus character^dp # DPs

Description^dp # DPs

Gap character^dp # DPs

Protein gene^dp # DPs

Sequence Identifier^dp # DPs

Keyword^dp # DPs

Sequence length^dp # DPs

Sequence organism^dp # DPs

Protein description^dp # DPs

Protein name^dp # DPs

Score^dp # DPs

Score Cutoff^dp # DPs

Score Max^dp # DPs

Score Min^dp # DPs

Sequence^dp # DPs

SubAlignment name^dp # DPs

bibliographicCitation^ap # APs

created^ap # APs

creator^ap # APs

description^ap # APs

identifier^ap # APs

issued^ap # APs

license^ap # APs

modified^ap # APs

publisher^ap # APs

rights^ap # APs